Welcome to the Tripal Plant PopGen Submit (TPPS) pipeline documentation!

Table of Contents:

• 1. Introduction
• 2. Features
  • 2.1. Data Types and Standards
  • 2.2. Data Accessibility
  • 2.3. User Friendliness
  • 2.4. Administrative Features
• 3. Tutorial
  • 3.1. Creating a New TPPSc Submission
  • 3.2. Author and Species Information (Page 1)
  • 3.3. Experimental Conditions (Page 2)
  • 3.4. Tree Accession (Page 3)
  • 3.5. Genotype, Phenotype, and Environmental Data (Page 4)
• 4. Administrators
  • 4.1. Installation
  • 4.2. Configuration
  • 4.3. Login and Profile
  • 4.4. Publication and Species Interface
  • 4.5. Study Design
  • 4.6. Plant Accession
  • 4.7. Genotype, Phenotype, and Environment
  • 4.8. Submission Summary
  • 4.9. Input Validation
  • 4.10. Data Submission
  • 4.11. Submission Management
• 5. Users
  • 5.1. Publication and Species
  • 5.2. Experimental Conditions
  • 5.3. Plant Accession
  • 5.4. Genotype, Phenotype, and Environment
  • 5.5. Submission Summary
• 6. Developers
  • 6.1. Coding Style Specifications
  • 6.2. Project Structure
  • 6.3. File Manipulation
  • 6.4. Where Does Data Go?
  • 6.5. MIAPPE Compliant Submissions
• 6. Doxygen Reference